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1

The complexity of failure: Implications of complexity theory for safety investigations

Sidney Dekker, Paul Cilliers, Jan-Hendrik Hofmeyr

Journal:

Year:

2011

Language:

english

File:

PDF, 193 KB

english, 2011

2

Complexity, Modeling, and Natural Resource Management

Cilliers, Paul, Biggs, Harry C., Blignaut, Sonja, Choles, Aiden G., Hofmeyr, Jan-Hendrik S., Jewitt, Graham P. W., Roux, Dirk J.

Journal:

Ecology and Society

Year:

2013

Language:

english

File:

PDF, 188 KB

english, 2013

3

Causation, Constructors and Codes

Hofmeyr, Jan-Hendrik S.

Journal:

Year:

2017

Language:

english

File:

PDF, 396 KB

english, 2017

4

An abstract cell model that describes the self-organization of cell function in living systems

Olaf Wolkenhauer, Jan-Hendrik S. Hofmeyr

Journal:

Journal of Theoretical Biology

Year:

2007

Language:

english

File:

PDF, 370 KB

english, 2007

5

The Role of Stoichiometric Analysis in Studies of Metabolism: An Example

ATHEL CORNISH-BOWDEN, JAN-HENDRIK S. HOFMEYR

Journal:

Journal of Theoretical Biology

Year:

2002

Language:

english

File:

PDF, 231 KB

english, 2002

6

Regulating the cellular economy of supply and demand

Jan-Hendrik S. Hofmeyr, Athel Cornish-Bowden

Journal:

Year:

2000

Language:

english

File:

PDF, 140 KB

english, 2000

7

The first Special Issue on code biology – A bird's-eye view

Hofmeyr, Jan-Hendrik S.

Journal:

Year:

2017

Language:

english

File:

PDF, 325 KB

english, 2017

8

Attractive models: how to make the silicon cell relevant and dynamic

Hans V. Westerhoff, Frank Bruggeman, Jan-Hendrik S. Hofmeyr, Jacky L. Snoep

Journal:

Comparative and Functional Genomics

Year:

2003

Language:

english

File:

PDF, 73 KB

english, 2003

9

Co-response Analysis: A New Experimental Strategy for Metabolic Control Analysis

Jan-Hendrik S. Hofmeyr, Athel Cornish-Bowden

Journal:

Journal of Theoretical Biology

Year:

1996

Language:

english

File:

PDF, 244 KB

english, 1996

10

Building the Cellular Puzzle: Control in Multi-level Reaction Networks

JAN-HENDRIK S. HOFMEYR, HANS V. WESTERHOFF

Journal:

Journal of Theoretical Biology

Year:

2001

Language:

english

File:

PDF, 446 KB

english, 2001

11

Getting to the inside of cells using metabolic control analysis

Hans V. Westerhoff, Jan-Hendrik S. Hofmeyr, Boris N. Kholodenko

Journal:

Biophysical Chemistry

Year:

1994

Language:

english

File:

PDF, 966 KB

english, 1994

12

Kinetic model of sucrose accumulation in maturing sugarcane culm tissue

Lafras Uys, Frederik C. Botha, Jan-Hendrik S. Hofmeyr, Johann M. Rohwer

Journal:

Year:

2007

Language:

english

File:

PDF, 772 KB

english, 2007

13

The xylose reductase/xylitol dehydrogenase/xylulokinase ratio affects product formation in recombinant xylose-utilising Saccharomyces cerevisiae

Anna Eliasson, Jan-Hendrik S Hofmeyr, Scott Pedler, Bärbel Hahn-Hägerdal

Journal:

Enzyme and Microbial Technology

Year:

2001

Language:

english

File:

PDF, 406 KB

english, 2001

14

The logic of kinetic regulation in the thioredoxin system

Ché S Pillay, Jan-Hendrik S Hofmeyr, Johann M Rohwer

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 563 KB

english, 2011

15

Effects of ethanol, octanoic and decanoic acids on fermentation and the passive influx of protons through the plasma membrane ofSaccharomyces cerevisiae

Sarita Stevens, Jan-Hendrik Servaas Hofmeyr

Journal:

Applied Microbiology and Biotechnology

Year:

1993

Language:

english

File:

PDF, 753 KB

english, 1993

16

Metabolic regulation: A control analytic perspective

Jan-Hendrik S. Hofmeyr

Journal:

Journal of Bioenergetics and Biomembranes

Year:

1995

Language:

english

File:

PDF, 1.01 MB

english, 1995

17

Identifying and characterising regulatory metabolites with generalised supply–demand analysis

Johann M. Rohwer, Jan-Hendrik S. Hofmeyr

Journal:

Journal of Theoretical Biology

Year:

2008

Language:

english

File:

PDF, 304 KB

english, 2008

18

Metabolite channelling and metabolic regulation

Jan-Hendrik S. Hofmeyr

Journal:

Journal of Theoretical Biology

Year:

1991

Language:

english

File:

PDF, 91 KB

english, 1991

19

A large-scale protein-function database

Apweiler, Rolf, Armstrong, Richard, Bairoch, Amos, Cornish-Bowden, Athel, Halling, Peter J, Hofmeyr, Jan-Hendrik S, Kettner, Carsten, Leyh, Thomas S, Rohwer, Johann, Schomburg, Dietmar

Journal:

Nature Chemical Biology

Year:

2010

Language:

english

File:

PDF, 66 KB

english, 2010

20

ECA: Control in Ecosystems

Hans V. Westerhoff, Wayne M. Getz, Frank Bruggeman, Jan-Hendrik S. Hofmeyr, Johann M. Rohwer, Jacky L. Snoep

Journal:

Molecular Biology Reports

Year:

2002

File:

PDF, 1.24 MB

2002

21

Systems Biology Volume 3 || The biochemical factory that autonomously fabricates itself

S. Hofmeyr, Jan-Hendrik

Year:

2007

Language:

english

File:

PDF, 107 KB

english, 2007

22

Kinetic and Thermodynamic Aspects of Enzyme Control and Regulation†

Rohwer, Johann M., Hofmeyr, Jan-Hendrik S.

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 617 KB

english, 2010

23

The importance of uniformity in reporting protein-function data

Rolf Apweiler, Athel Cornish-Bowden, Jan-Hendrik S. Hofmeyr, Carsten Kettner, Thomas S. Leyh, Dietmar Schomburg, Keith Tipton

Journal:

Trends in Biochemical Sciences

Year:

2005

Language:

english

File:

PDF, 47 KB

english, 2005

24

Control analysis of trophic chains

Wayne M. Getz, Hans V. Westerhoff, Jan-Hendrik S. Hofmeyr, Jacky L. Snoep

Journal:

Ecological Modelling

Year:

2003

Language:

english

File:

PDF, 215 KB

english, 2003

25

Metabolic control analysis of moiety-conserved cycles

Jan-Hendrik S. HOFMEYR, Henrik KACSER, Kirsten J. van der MERWE

Journal:

Year:

1986

Language:

english

File:

PDF, 1.00 MB

english, 1986

26

Control-pattern analysis of metabolic pathways : Flux and concentration control in linear pathways

Jan-Hendrik S. HOFMEYR

Journal:

Year:

1989

Language:

english

File:

PDF, 1.18 MB

english, 1989

27

Quantitative assessment of regulation in metabolic systems

Jan-Hendrik S. HOFMEYR, Athel CORNISH-BOWDEN

Journal:

Year:

1991

Language:

english

File:

PDF, 1.51 MB

english, 1991

28

Taking enzyme kinetics out of control; putting control into regulation

Jan-Hendrik S. HOFMEYR, Athel CORNISH-BOWDEN, Johann M. ROHWER

Journal:

Year:

1993

Language:

english

File:

PDF, 525 KB

english, 1993

29

From Top-Down to Bottom-Up: Computational Modeling Approaches for Cellular Redoxin Networks

Pillay, Ché S., Hofmeyr, Jan-Hendrik, Mashamaite, Lefentse N., Rohwer, Johann M.

Journal:

Antioxidants & Redox Signaling

Year:

2013

Language:

english

File:

PDF, 1.32 MB

english, 2013

30

Regulation of glycogen synthase from mammalian skeletal muscle - a unifying view of allosteric and covalent regulation

Palm, Daniel C., Rohwer, Johann M., Hofmeyr, Jan-Hendrik S.

Journal:

Year:

2013

Language:

english

File:

PDF, 565 KB

english, 2013

31

A generic rate equation for catalysed, template-directed polymerisation

Hofmeyr, Jan-Hendrik S., Gqwaka, Olona P.C., Rohwer, Johann M.

Journal:

Year:

2013

Language:

english

File:

PDF, 594 KB

english, 2013

32

Standards for Reporting Enzyme Data: The STRENDA Consortium: What it aims to do and why it should be helpful

Tipton, Keith F., Armstrong, Richard N., Bakker, Barbara M., Bairoch, Amos, Cornish-Bowden, Athel, Halling, Peter J., Hofmeyr, Jan-Hendrik, Leyh, Thomas S., Kettner, Carsten, Raushel, Frank M., Rohwer

Journal:

Perspectives in Science

Year:

2014

Language:

english

File:

PDF, 404 KB

english, 2014

33

[Methods in Enzymology] Methods in Systems Biology Volume 500 || Supply–Demand Analysis

Hofmeyr, Jan-Hendrik S.

Year:

2011

Language:

english

File:

PDF, 393 KB

english, 2011

34

Defining and measuring autophagosome flux—concept and reality

Loos, Ben, Toit, André du, Hofmeyr, Jan-Hendrik S

Journal:

Year:

2014

Language:

english

File:

PDF, 677 KB

english, 2014

35

Is the “Histone Code” an Organic Code?

Kühn, Stefan, Hofmeyr, Jan-Hendrik S.

Journal:

Year:

2014

Language:

english

File:

PDF, 491 KB

english, 2014

36

Editorial: 12th BTK Meeting: ‘Systems Biology: redefining BioThermoKinetics’

Snoep, Jacky L., Rohwer, Johann M., Hofmeyr, Jan-Hendrik S.

Journal:

IEE Proceedings - Systems Biology

Year:

2006

Language:

english

File:

PDF, 42 KB

english, 2006

37

The reversible Hill equation: how to incorporate cooperative enzymes into metabolic models

Hofmeyr, Jan-Hendrik S., Cornish-Bowden, Hofmeyr

Journal:

Year:

1997

Language:

english

File:

PDF, 789 KB

english, 1997

38

Ein Beitrag zu einer Theorie lebender Zellen (A Contribution towards a Theory of Living Cells)

Wolkenhauer, Olaf, Hofmeyr, Jan-Hendrik S.

Journal:

at - Automatisierungstechnik

Year:

2008

File:

PDF, 252 KB

2008

39

MetaModel: a program for modelling and control analysis of metabolic pathways on the IBM PC and compatibles

Cornish-Bowden, Athel, Hofmeyr, Jan-Hendrik S.

Journal:

Year:

1991

Language:

english

File:

PDF, 445 KB

english, 1991

40

Inhibition of Cytochrome P-450 11β by Some Naturally Occurring Acetophenones and Plant Extracts from the Shrub Salsola tuberculatiformis

Swart, Pieter, van der Merwe, Kirsten, Swart, Amanda, Todres, Penelope, Hofmeyr, Jan-Hendrik

Journal:

Year:

1993

Language:

english

File:

PDF, 430 KB

english, 1993

41

Tracing regulatory routes in metabolism using generalised supply-demand analysis

Christensen, Carl D., Hofmeyr, Jan-Hendrik S., Rohwer, Johann M.

Journal:

BMC Systems Biology

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

42

Enzymes or redox couples? The kinetics of thioredoxin and glutaredoxin reactions in a systems biology context

Pillay, Ché S., Hofmeyr, Jan-Hendrik S., Olivier, Brett G., Snoep, Jacky L., Rohwer, Johann M.

Journal:

Biochemical Journal

Year:

2009

Language:

english

File:

PDF, 178 KB

english, 2009

43

Stoicheiometric analysis in studies of metabolism

Cornish-Bowden, Athel, Hofmeyr, Jan-Hendrik S., Cárdenas, María Luz

Journal:

Biochemical Society Transactions

Year:

2002

Language:

english

File:

PDF, 285 KB

english, 2002

44

The regulatory design of an allosteric feedback loop: the effect of saturation by pathway substrate

Hofmeyr, Jan-Hendrik S., Olivier, Brett G.

Journal:

Biochemical Society Transactions

Year:

2001

Language:

english

File:

PDF, 646 KB

english, 2001

45

Stoicheiometric analysis in studies of metabolism

Cornish-Bowden, Athel, Hofmeyr, Jan-Hendrik S., Cárdenas, María Luz

Journal:

Biochemical Society Transactions

Year:

2001

Language:

english

File:

PDF, 285 KB

english, 2001

46

The regulatory design of an allosteric feedback loop: the effect of saturation by pathway substrate

Jan-Hendrik, S. Hofmeyr, Olivier, Brett G.

Journal:

Biochemical Society Transactions

Year:

2002

Language:

english

File:

PDF, 646 KB

english, 2002

47

PySCeSToolbox: a collection of metabolic pathway analysis tools

Christensen, Carl D, Hofmeyr, Jan-Hendrik S, Rohwer, Johann M

Journal:

Year:

2017

Language:

english

File:

PDF, 75 KB

english, 2017

48

Measuring Autophagosome Flux

du Toit, Andre, Hofmeyr, Jan-Hendrik S., Gniadek, Thomas J., Loos, Ben

Journal:

Year:

2018

Language:

english

File:

PDF, 5.14 MB

english, 2018

49

The Precision Control of Autophagic Flux and Vesicle Dynamics—A Micropattern Approach

du Toit, André, De Wet, Sholto, Hofmeyr, Jan-Hendrik, Müller-Nedebock, Kristian, Loos, Ben

Journal:

Year:

2018

Language:

english

File:

PDF, 6.26 MB

english, 2018

50

Delving deeper: Relating the behaviour of a metabolic system to the properties of its components using symbolic metabolic control analysis

Christensen, Carl D., Hofmeyr, Jan-Hendrik S., Rohwer, Johann M., Yamanishi, Yoshihiro

Journal:

Year:

2018

Language:

english

File:

PDF, 2.05 MB

english, 2018

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